Annotation Resources

This page contains an assortment of resources to help explain the structure and relationship of the Annotation object. The annotation data model is based on the W3C Web Annotation model and is used to attach annotations to any digital object in the DiSSCo infrastructure. It follows the model as outlined in the below image. Alt text

Latimer Core Resources

This page contains an assortment of resources to help facilitate activities associated with the Latimer Core standard.

SSSOM

SKOS Mappings metadata elements based on Simple Standard for Sharing Ontological Mappings (SSSOM)

DiSSCo has developed three SSSOM mappings to other data standards: DwC-A, ABCD(EFG), DwC-DP. For each of these there is a tsv available for the 0.4.0 version of the Digital Specimen and Digital Media object. The basis for this mapping is the logic developed in the DiSSCo Translator.

Darwin Core Archive: https://schemas.dissco.tech/schemas/data-mapping/0.4.0/sssom_dwca.tsv
Access to Biological Collection Data (ABCD) + Extension for Geosciences (EFG) : https://schemas.dissco.tech/schemas/data-mapping/0.4.0/sssom_abcdefg.tsv
Darwin Core Data Package: https://schemas.dissco.tech/schemas/data-mapping/0.4.0/sssom_dwc_dp.tsv

More information on the SSSOM standard can be found here:

Specification: https://mapping-commons.github.io/sssom/
Repository: https://github.com/mapping-commons/sssom
Citation: Nicolas Matentzoglu, James P Balhoff, Susan M Bello, Chris Bizon, Matthew Brush, Tiffany J Callahan, Christopher G Chute, William D Duncan, Chris T Evelo, Davera Gabriel, John Graybeal, Alasdair Gray, Benjamin M Gyori, Melissa Haendel, Henriette Harmse, Nomi L Harris, Ian Harrow, Harshad B Hegde, Amelia L Hoyt, Charles T Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Koehler, Thomas Liener, Qinqin Long, James Malone, James A McLaughlin, Julie A McMurry, Sierra Moxon, Monica C Munoz-Torres, David Osumi-Sutherland, James A Overton, Bjoern Peters, Tim Putman, Núria Queralt-Rosinach, Kent Shefchek, Harold Solbrig, Anne Thessen, Tania Tudorache, Nicole Vasilevsky, Alex H Wagner, Christopher J Mungall, A Simple Standard for Sharing Ontological Mappings (SSSOM), Database, Volume 2022, 2022, baac035, https://doi.org/10.1093/database/baac035

Diagrams

Class Diagrams

                            classDiagram
 class Annotation { 
   dcterms:identifier : string 
   ods:fdoType : string 
   ods:status : None 
   ods:jobID : string 
   ods:version : integer 
   oa:motivation : None 
   oa:motivatedBy : string 
   oa:hasTarget : object 
   oa:hasBody : object 
   dcterms:creator : object 
   dcterms:created : string 
   dcterms:modified : string 
   dcterms:issued : string 
   as:generator : object 
   ods:batchID : string 
   ods:placeInBatch : integer 
   ods:mergingDecisionStatus : string 
   ods:mergingStateChangeDate : string 
   ods:hasMergingStateChangedBy : object 
   ods:hasTombstoneMetadata : object 
 }
 class hasAggregateRating {
   schema:ratingCount : integer 
   schema:ratingValue : number 
 }
 class TombstoneMetadata { 
   ods:tombstoneDate : string 
   ods:tombstoneText : string 
   ods:hasAgents : array<ods:Agent> 
   ods:hasRelatedPIDs : array<ods:RelatedPID> 
 }
 class RelatedPID { 
   dcterms:identifier : string 
   schema:identifier : string 
   ods:relationshipType : string 
 }
 class Agent { 
   schema:identifier : string 
   schema:name : string 
   ods:hasRoles : array<ods:Role> 
   schema:email : string 
   schema:url : string 
   ods:hasIdentifiers : array<ods:Identifier> 
 }
 class Role { 
   schema:roleName : string 
   schema:startDate : string 
   schema:endDate : string 
   schema:position : integer 
 }
 class AnnotationTarget { 
   dcterms:identifier : string 
   ods:fdoType : string 
   oa:hasSelector : object 
 }
 class AnnotationBody { 
   oa:value : array<string> 
   dcterms:references : string 
   ods:score : number 
 }
 class Identifier { 
   dcterms:title : string 
   dcterms:type : string 
   dcterms:identifier : string 
   dcterms:format : array<string> 
   dcterms:subject : array<string> 
   ods:isPartOfLabel : boolean 
   ods:gupriLevel : string 
   ods:identifierStatus : string 
 }
Annotation -- hasAggregateRating
Annotation -- TombstoneMetadata
TombstoneMetadata -- RelatedPID
TombstoneMetadata -- Agent
Annotation -- Agent
Agent -- Role
Agent -- Identifier
Annotation -- AnnotationTarget
Annotation -- AnnotationBody

Entity-Relationship Diagrams

                            erDiagram
    Annotation ||--|| hasAggregateRating : Has
    Annotation ||--o| TombstoneMetadata : Has
    TombstoneMetadata ||--o{ RelatedPID : Has
    TombstoneMetadata ||--|{ Agent : Has
    Annotation ||--o{ Agent : Has
    Agent ||--|{ Role : Has
    Agent ||--o{ Identifier : Has
    Annotation ||--|| AnnotationTarget : Has
    Annotation ||--|| AnnotationBody : Has

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Annotation Core Resources

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