SSSOM

SKOS Mappings metadata elements based on Simple Standard for Sharing Ontological Mappings (SSSOM)

DiSSCo has developed three SSSOM mappings to other data standards: DwC-A, ABCD(EFG), DwC-DP. For each of these there is a tsv available for the 0.4.0 version of the Digital Specimen and Digital Media object. The basis for this mapping is the logic developed in the DiSSCo Translator.

• Darwin Core Archive: https://schemas.dissco.tech/schemas/data-mapping/0.4.0/sssom_dwca.tsv
• Access to Biological Collection Data (ABCD) + Extension for Geosciences (EFG) : https://schemas.dissco.tech/schemas/data-mapping/0.4.0/sssom_abcdefg.tsv
• Darwin Core Data Package: https://schemas.dissco.tech/schemas/data-mapping/0.4.0/sssom_dwc_dp.tsv

More information on the SSSOM standard can be found here:

• Specification: https://mapping-commons.github.io/sssom/
• Repository: https://github.com/mapping-commons/sssom
• Citation: Nicolas Matentzoglu, James P Balhoff, Susan M Bello, Chris Bizon, Matthew Brush, Tiffany J Callahan, Christopher G Chute, William D Duncan, Chris T Evelo, Davera Gabriel, John Graybeal, Alasdair Gray, Benjamin M Gyori, Melissa Haendel, Henriette Harmse, Nomi L Harris, Ian Harrow, Harshad B Hegde, Amelia L Hoyt, Charles T Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Koehler, Thomas Liener, Qinqin Long, James Malone, James A McLaughlin, Julie A McMurry, Sierra Moxon, Monica C Munoz-Torres, David Osumi-Sutherland, James A Overton, Bjoern Peters, Tim Putman, Núria Queralt-Rosinach, Kent Shefchek, Harold Solbrig, Anne Thessen, Tania Tudorache, Nicole Vasilevsky, Alex H Wagner, Christopher J Mungall, A Simple Standard for Sharing Ontological Mappings (SSSOM), Database, Volume 2022, 2022, baac035, https://doi.org/10.1093/database/baac035

                            classDiagram
 class SourceSystem { 
   schema:identifier : string 
   ods:fdoType : string 
   ods:status : string 
   schema:version : integer 
   schema:name : string 
   schema:description : string 
   schema:dateCreated : string 
   schema:dateModified : string 
   schema:creator : object 
   schema:url : string 
   ods:filters : array<string> 
   ltc:collectionManagementSystem : string 
   ods:translatorType : string 
   ods:maximumRecords : integer 
   ods:dataMappingID : string 
   ods:specimenMachineAnnotationServices : array<string> 
   ods:mediaMachineAnnotationServices : array<string> 
   ods:hasTombstoneMetadata : object 
 }
 class TombstoneMetadata { 
   ods:tombstoneDate : string 
   ods:tombstoneText : string 
   ods:hasAgents : array<ods:Agent> 
   ods:hasRelatedPIDs : array<ods:RelatedPID> 
 }
 class RelatedPID { 
   dcterms:identifier : string 
   schema:identifier : string 
   ods:relationshipType : string 
 }
 class Agent { 
   schema:identifier : string 
   schema:name : string 
   ods:hasRoles : array<ods:Role> 
   schema:email : string 
   schema:url : string 
   ods:hasIdentifiers : array<ods:Identifier> 
 }
 class Role { 
   schema:roleName : string 
   schema:startDate : string 
   schema:endDate : string 
   schema:position : integer 
 }
 class Identifier { 
   dcterms:title : string 
   dcterms:type : string 
   dcterms:identifier : string 
   dcterms:format : array<string> 
   dcterms:subject : array<string> 
   ods:isPartOfLabel : boolean 
   ods:gupriLevel : string 
   ods:identifierStatus : string 
 }
SourceSystem -- TombstoneMetadata
TombstoneMetadata -- RelatedPID
SourceSystem -- Agent
Agent -- Role
Agent -- Identifier
TombstoneMetadata -- Agent
                            

                            erDiagram
    SourceSystem ||--o| TombstoneMetadata : Has
    TombstoneMetadata ||--o{ RelatedPID : Has
    SourceSystem ||--|{ Agent : Has
    Agent ||--|{ Role : Has
    Agent ||--o{ Identifier : Has
    TombstoneMetadata ||--|{ Agent : Has